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From104US$ /night
Check-in
31Dec2025Select date
Check-out
01Jan2026Select date
Rooms and Guests2 Guests, 1 Room
Key details

About the Hotel

200 Townsend Avenue, Boothbay Harbor, Maine, United States, 04538
-
Near Boothbay Harbor
Very good
7.2
7.7
/10
4.0
4.0
/5

Flagship Inn - A Pet-Friendly Hotel with Heated Pool and Nature Preserve Access

Located near Penny Lake Preserve, this 2-star Boothbay Harbor hotel features over 80 non-smoking rooms and suites designed for families and travelers. The property includes a heated outdoor saltwater pool, hot tub, playground, and picnic area with grills. All accommodations come equipped with mini-fridges, flat-screen TVs, air conditioning, and free WiFi. Pet-friendly rooms are available with special amenities for four-legged guests. A complimentary breakfast offers items like eggs, bagels, yogurt, and fresh fruit. A footbridge directly connects Flagship Inn to the walking trails of Penny Lake Preserve. The property sits 0.5 miles from downtown and the harbor, with a trolley stop at the front entrance.

Pros

Direct access to Penny Lake Preserve's hiking trails via private footbridge

Pet-friendly rooms with special amenities for dogs

Saltwater pool uses natural sanitization without harsh chemicals

Recently installed solar panel system for environmental sustainability

Cons

Pool and hot tub only available during spring and summer seasons

Located 0.5 miles from downtown, requiring a walk or trolley ride to reach harbor attractions

“Flagship Inn's location just outside the harbor offers a less congested experience of Boothbay Harbor. While some past guests mention that the decor feels dated and the property shows signs of wear, the clean rooms and attentive staff are definite advantages. The accessible room with ramp access and a walk-in shower stood out as particularly well-maintained.”
Hotel logo
Isabella MooreSenior Editorial Director at Petfriendlyhotels
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Select your room type

Cozy rooms, spacious suites, and family-friendly homes, all with flexible cancellation policies & special deals
Standard Double Room
2 persons
23 m² 
2 Double beds
Shower
Private pool
Family Suite
2 persons
46 m² 
1 King-size bed
Coffee machine
Air conditioning
Suite Hot Tub
2 persons
24 m² 
1 King-size bed
Coffee machine
Air conditioning
Standard King Room
2 persons
23 m² 
1 King-size bed
Shower
Private pool
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Facilities

Enjoy premium amenities for a relaxing stay with your pet

General

  • Non-smoking rooms
  • Free Wi-Fi
  • Parking
  • Pets allowed
  • Rooms/ Facilities for disabled
  • 24-hour security
  • Luggage storage
  • Smoke detectors
  • Fire extinguishers
  • Key card access
  • Key access

Sports & Fitness

  • Hiking
  • Golf course

Services

  • Housekeeping

Dining

  • Picnic area/ Tables

Spa & Leisure

  • Seasonal outdoor pool
  • Heated swimming pool
  • Beach umbrellas
  • Sun loungers
  • Sun terrace
  • Garden area
  • BBQ facilities

Room features

  • Air conditioning
  • Heating
  • Garden furniture
  • Tea and coffee facilities

Bathroom

  • Free toiletries

Media

  • Flat-screen TV

Room decor

  • Carpeted floor
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Dining Onsite

Flagship Inn invites guests to indulge in a delightful array of dining options that reflect local flavors and a warm atmosphere. With cozy, intimate settings and a focus on seasonal, farm-to-table dishes, dining here transforms every meal into a cherished gathering with friends and family.
Flagship Inn Boothbay Harbor Restaurant photo

The Thistle Inn's Restaurant

American comfort food with a coastal twist
Ambiance
Featuring four unique dining rooms, two adorned with inviting fireplaces, creating a cozy atmosphere perfect for winter gatherings.
Key Offerings
Savor delights like fish and chips, lobster, and ribs, complemented by a selection of drinks in a relaxed setting. Ideal for any occasion.
Reservation
Reservations recommended.
Open for breakfast, lunch, and dinner; hours vary.

Harborside Tavern

Casual American fare with farm-to-table emphasis
Ambiance
A comfortable and friendly space that encourages socializing in a warm setting, great for all-day dining.
Key Offerings
Enjoy a seasonal menu focusing on robust flavors, showcasing local seafood and comfort dishes.
Reservation
Not needed.
Open for breakfast, lunch, and dinner; hours vary.

Blue Moon Cafe

Classic breakfast fare with local favorites
Ambiance
A lively breakfast spot known for its vibrant atmosphere and welcoming staff, perfect for early risers.
Key Offerings
Renowned for hearty breakfasts that emphasize local ingredients to start the day off right.
Reservation
Not needed.
Open for breakfast only; hours vary.

Location

200 Townsend Avenue, Boothbay Harbor, Maine, United States, 04538
Map view
200 Townsend Avenue, Boothbay Harbor, Maine, United States, 04538
Nearby
196 Townsend Ave
Penny Lake Preserve
180 m
Restaurants
Pinkham's Gourmet Market
630 m
295 Townsend Ave
Explore Boothbay Harbor
Local Highlights
Top Attractions
Activities
Dining
Entertainment
Maine State Aquarium
25 minutes' walk
A space featuring marine life and educational exhibits, perfect for families. Includes touch tanks and guided tours.
Boothbay Region Art Foundation
15 minutes' walk
A local art hub showcasing works from regional artists. Features rotating exhibits and special community events throughout the year.
Lobster Cove Preserve
15 minutes' walk
Scenic walking trails with stunning coastal views, ideal for nature lovers. Offers easy access to wildlife viewing and photography.
Coastal Maine Botanical Gardens
35 minutes' walk
Renowned botanical gardens with diverse themes and seasonal displays. Educational programs and events are available for all ages.
Kayaking in Boothbay Harbor
5 minutes' drive
Thrilling kayaking adventures available. Rentals and guided tours offered, ideal for both beginners and experienced paddlers.
Hiking at Penny Lake Preserve
3 minutes' walk
Relaxing trails through peaceful woodlands perfect for birdwatching. Open year-round and free to access for leisurely strolls.
Boothbay Railway Village
6 minutes' drive
Interactive history museum featuring antique trains and vintage buildings. Great for families and history enthusiasts, with seasonal events.
Pinkham's Gourmet Market
8 minutes' walk
Casual bistro offering local favorites and gourmet sandwiches, ideal for lunch. Known for fresh ingredients and a cozy atmosphere.
Ed Brown's Wharfside Gallery
5 minutes' drive
Delightful waterfront dining featuring fresh seafood and stunning views. Reservations recommended, with options for dietary needs.
The Boothbay Lobster Wharf
5 minutes' drive
Casual spot known for its lobster rolls and scenic harbor views. Family-friendly with an outdoor seating area for warmer months.
Pythian Opera House
10 minutes' walk
Historic venue hosting live performances, including concerts and community events. Family-friendly ambiance in a charming setting.
The Boothbay Harbor Country Club
10 minutes' drive
Offers evening events with live music and fine dining options. Perfect for couples looking for a romantic night out.
Getting around
City Centre
Boothbay Harbor14 min  ·  1.1 km
Airports
Augusta State Airport (AUG)90 min  ·  59.7 km
Knox County Regional Airport (RKD)110 min  ·  72.9 km
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Property information and rules
Check-in
from 15:00-22:00
Check-out
until 11 am
Guest Parking
Private parking is possible on site for free.
Internet
is available in for free.
Breakfast
The hotel Flagship Inn serves a full breakfast for free. 
Pets
Pets are allowed on request.
Number of rooms:
82
FAQs
About Flagship Inn
What are the check-in and check-out times at Flagship Inn?
Check-in time is at 15:00 and check-out time is at 11:30.
Is parking available at Flagship Inn?
Private parking is available on-site free of charge, and no reservation is needed.
How far is Flagship Inn from Boothbay Harbor town center?
The hotel is located 2 km from Boothbay Harbor town center.
What dining options are available near Flagship Inn?
Nearby restaurants include Ports Pizzeria, located 1 km away, and Hometown Convenience, which is also 1 km away.
What amenities can guests enjoy at Flagship Inn?
The hotel features a heated outdoor pool, hot tub, free Wi-Fi, luggage storage, and beach umbrellas.
What recreational activities are available at Flagship Inn?
Guests can participate in activities such as whale watching, golf, hiking, and enjoy the seasonal outdoor heated pool.
What facilities are provided in the rooms at Flagship Inn?
Rooms feature air conditioning, flat-screen TVs, tea and coffee-making facilities, and complimentary toiletries.
Does Flagship Inn offer breakfast?
Breakfast is available for an additional charge.
How close is Flagship Inn to the Atlantic Ocean?
The hotel is located just minutes away from the Atlantic Ocean.
What types of views can guests expect from their rooms at Flagship Inn?
Rooms overlook the pool area.
How far is Flagship Inn from Augusta State Airport?
Flagship Inn is approximately 60 km away from Augusta State Airport.
Is Flagship Inn suitable for family stays?
The hotel features spacious family suites designed to provide comfort at an affordable cost.

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Check-in
31Dec2025Select date
Check-out
01Jan2026Select date
Rooms and Guests2 Guests, 1 Room

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Flagship Inn Boothbay Harbor Exterior photo

Flagship Inn

7.2
Very good689 reviews
1.1 km from center
94 US$
104 US$
per night
Mobile-only price